[Chimera-users] matchmaker alignment

[Elaine Meng]

Hi Boaz,
Yes, you can save any alignment from Multalign Viewer (the tool that  
shows the alignment by default) in the same formats that can be  
read:  aligned FASTA, aligned NBRF/PIR, Clustal, MSF, RSF, and  
Stockholm.   This is done with File... Save As in the Multalign  
Viewer menu.  You can also save an encapsulated PostScript image to  
use in a paper or presentation (File... Save EPS in the Multalign  
Viewer menu).

To see the full manual page for Multalign Viewer, which includes many  
other features, click the Help button on the Multalign Viewer window  
(the window showing the sequence alignment).  Here it is in our  
"development" documentation:
http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/ 
multalignviewer/framemav.html

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.                          meng at cgl.ucsf.edu
UCSF Computer Graphics Lab and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco
                      http://www.cgl.ucsf.edu/home/meng/index.html

On Oct 11, 2005, at 9:15 AM, Boaz Shaanan wrote:

> Hi,
>
>  Is it possible to save as a file (or print) the alignment that is  
> produced by matchmaker between two structures that are read in ?
>
>   Thanks,
>
>          Boaz
>
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