[Chimera-users] circular permuation

Bryan W. Lepore lepore at brandeis.edu
Wed May 4 13:12:40 PDT 2005

On Wed, 4 May 2005, Elaine Meng wrote:
> However, it is not the only possibility.  Two proteins related by 
> circular permutation might have been generated by fusions of two smaller 
> parts that fused in the opposite order, for example. Here are some

interesting - thanks Elaine.

by the way, is the sequence alignment widget inacessible when doing e.g.

chimera --nogui cmd:input.dat

(contents of input.dat):

mmaker #0:.b #1:.a alg sw pair bb show true

in other words, does mmaker have a keyword to specify an alignment output?


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