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Yup, that took care of it, it works now.
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<div class="">Thanks Tom!</div>
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<div class="">Lars</div>
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<div class="">On Mar 7, 2019, at 3:12 PM, Tom Goddard <<a href="mailto:goddard@sonic.net" class="">goddard@sonic.net</a>> wrote:</div>
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Oops. Should be
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<div class=""><span class="Apple-tab-span" style="white-space:pre"></span>v.new_region(ijk_step = (1,1,1), adjust_step = False)</div>
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<div class="">Chimera automatically adjust the step size to stay within a maximum total number of voxels. The adjust_step = False means not to do that automatic changing of the specified step.</div>
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<div class=""><span class="Apple-tab-span" style="white-space:pre"></span>Tom</div>
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<div class="">On Mar 7, 2019, at 2:57 PM, Lars Hangartner <<a href="mailto:lhangart@scripps.edu" class="">lhangart@scripps.edu</a>> wrote:</div>
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Hi Tom.
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<div class="">Thanks for the reply. Unfortunately, this did not work. My implementation was as follows and did not change anything.</div>
<div class="">Best,</div>
<div class="">Lars</div>
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<span style="color: #ad3da4" class=""><b class="">for</b></span> vol <span style="color: #ad3da4" class="">
<b class="">in</b></span> openModels.list(modelTypes=[Volume]):</div>
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vol.new_region(ijk_step = (<span style="color: #272ad8" class="">1</span>,<span style="color: #272ad8" class="">1</span>,<span style="color: #272ad8" class="">1</span>))</div>
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<div class="">On Mar 7, 2019, at 1:07 PM, Tom Goddard <<a href="mailto:goddard@sonic.net" class="">goddard@sonic.net</a>> wrote:</div>
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To set the step of a Volume model v in Chimera in Python code
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<div class=""><span class="Apple-tab-span" style="white-space:pre"></span>v.new_region(ijk_step = (1,1,1))</div>
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<div class=""> Tom</div>
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<div class="">On Mar 6, 2019, at 8:42 PM, Lars Hangartner <<a href="mailto:lhangart@scripps.edu" class="">lhangart@scripps.edu</a>> wrote:</div>
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Hi Eric,
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<div class="">Thanks for the swift response, worked like a charm. May I also ask how to set the ’step’ property value from the volume viewer GUI pop-up from a script?</div>
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<div class="">Thanks,</div>
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<div class="">Lars<br class="">
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<div class="">On Mar 6, 2019, at 3:40 PM, Eric Pettersen <<a href="mailto:pett@cgl.ucsf.edu" class="">pett@cgl.ucsf.edu</a>> wrote:</div>
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Hi Lars,
<div class=""><span class="Apple-tab-span" style="white-space:pre"></span>The model attributes for the ID are ‘id’/‘subid’ for the parts before and after any ‘.’ respectively, and the ‘name’ attribute has the model name. You would loop through all volume models
with something like:</div>
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<div class="">from chimera import openModels</div>
<div class="">from VolumeViewer import Volume</div>
<div class="">for vol in openModels.list(modelTypes=[Volume]):</div>
<div class=""><span class="Apple-tab-span" style="white-space:pre"></span>print “%d.%d %s” % (<a href="http://vol.id/" class="">vol.id</a>, vol.subid, vol.name)</div>
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<div class="">We realize the programmer documentation isn’t great. What little we have you can find here: <a href="https://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/index.html" class="">https://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/index.html</a> .
One of our objectives for ChimeraX is much better programmer documentation.</div>
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<div class="">—Eric</div>
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<div class=""><span class="Apple-tab-span" style="white-space: pre;"></span>Eric Pettersen</div>
<div class=""><span class="Apple-tab-span" style="white-space: pre;"></span>UCSF Computer Graphics Lab</div>
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<div class="">On Mar 6, 2019, at 10:40 AM, Lars Hangartner <<a href="mailto:lhangart@scripps.edu" class="">lhangart@scripps.edu</a>> wrote:</div>
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<div class="">Hi guys,<br class="">
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I am desperately looking to get the model_id / model name from all open volume objects. I have tried openModel.list()[0].model_id in many iterations but no success… I would like to iterate through models and identify the resampled ones.<br class="">
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Can anybody help?<br class="">
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Thanks,<br class="">
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Lars<br class="">
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P.S: API documentation would really be helpful. <br class="">
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