<div dir="ltr"><div class="gmail_default" style="font-family:monospace,monospace;font-size:small;color:#444444">Hello Eric, </div><div class="gmail_default" style="font-family:monospace,monospace;font-size:small;color:#444444"><br></div><div class="gmail_default" style="font-family:monospace,monospace;font-size:small;color:#444444">It perfectly worked! Thank you a lot!</div><div class="gmail_default" style="font-family:monospace,monospace;font-size:small;color:#444444"><br></div><div class="gmail_default" style="font-family:monospace,monospace;font-size:small;color:#444444">Regards :)</div></div><div class="gmail_extra"><br><div class="gmail_quote">2017-05-15 20:12 GMT+02:00 Eric Pettersen <span dir="ltr"><<a href="mailto:pett@cgl.ucsf.edu" target="_blank">pett@cgl.ucsf.edu</a>></span>:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">The ‘movieFile’ argument to EnsembleLoader.loadEnsemble is expected to be a “metafile” as documented here:<div><br></div><div><a href="http://www.cgl.ucsf.edu/chimera/current/docs/ContributedSoftware/movie/movie.html" target="_blank">MD Movie</a> (third paragraph after the first table)</div><div><br></div><div>So, one option is to use a path to a metafile as that argument. To use the PDB file directly as the argument, you need to import loadEnsemble from the PDB format module, like so:</div><div><br></div><div>from Trajectory.formats.Pdb import loadEnsemble</div><div><br></div><div>Then call it as:</div><div><br></div><div>loadEnsemble((“single”, "/<wbr>Users/ME/Desktop/movie.pdb”), None, None, MovieDialog)</div><div><br></div><div>—Eric</div><div><br><div>
<div style="color:rgb(0,0,0);letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word"><div><span class="m_-4198620863413212389Apple-tab-span" style="white-space:pre-wrap"> </span>Eric Pettersen</div><div><span class="m_-4198620863413212389Apple-tab-span" style="white-space:pre-wrap"> </span>UCSF Computer Graphics Lab</div></div><br class="m_-4198620863413212389Apple-interchange-newline">
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<br><div><blockquote type="cite"><div><div class="h5"><div>On May 14, 2017, at 6:21 AM, Pablo Solar Rodríguez <<a href="mailto:pablosolar.r@gmail.com" target="_blank">pablosolar.r@gmail.com</a>> wrote:</div><br class="m_-4198620863413212389Apple-interchange-newline"></div></div><div><div><div class="h5"><div dir="ltr"><div class="gmail_default" style="font-family:monospace,monospace;font-size:small;color:rgb(68,68,68)">Hello all!</div><div class="gmail_default" style="font-family:monospace,monospace;font-size:small;color:rgb(68,68,68)"><br></div><div class="gmail_default" style="font-family:monospace,monospace;font-size:small;color:rgb(68,68,68)">It is possible to open the MD Movie trajectory with a custom format and a file from a plugin?</div><div class="gmail_default" style="font-family:monospace,monospace;font-size:small;color:rgb(68,68,68)"><br></div><div class="gmail_default" style="font-family:monospace,monospace;font-size:small;color:rgb(68,68,68)">I am trying to do this:</div><div class="gmail_default" style="font-family:monospace,monospace;font-size:small;color:rgb(68,68,68)"><br></div><div class="gmail_default" style="font-family:monospace,monospace;font-size:small;color:rgb(68,68,68)"><div class="gmail_default"><pre style="font-family:menlo"><i><span style="color:rgb(0,0,128);font-weight:bold">from </span>Movie.gui <span style="color:rgb(0,0,128);font-weight:bold">import </span>MovieDialog<br><span style="color:rgb(0,0,128);font-weight:bold">from </span>Trajectory <span style="color:rgb(0,0,128);font-weight:bold">import </span>EnsembleLoader<br>EnsembleLoader.loadEnsemble(<wbr>MovieDialog, <span style="color:rgb(102,0,153)">movieFile</span>=<span style="color:rgb(0,128,0);font-weight:bold">"/Users/ME/Desktop/<wbr>movie.pdb"</span>)</i></pre></div></div><div><div class="gmail_default" style="font-family:monospace,monospace;font-size:small;color:rgb(68,68,68)"><i></i>But I get this error</div><i><br></i></div><div><i><br></i></div><div><div><i>ValueError: Unknown trajectory format: 'MODEL 0'</i></div><div><i><br></i></div><div><i> File "/Applications/Chimera.app/<wbr>Contents/Resources/share/<wbr>Trajectory/EnsembleLoader.py", line 131, in loadEnsemble</i></div><div><i> raise ValueError("Unknown trajectory format: '%s'" % format)</i></div><div><i><br></i></div><div><i>See reply log for Python traceback.</i></div></div><div><br></div><div><div class="gmail_default" style="font-family:monospace,monospace;font-size:small;color:rgb(68,68,68)">I think it is because I need to set the format (self.curFormat in the EnsembleLoader class) but it is not possible. How can I solve this?</div><div class="gmail_default" style="font-family:monospace,monospace;font-size:small;color:rgb(68,68,68)"><br></div><div class="gmail_default" style="font-family:monospace,monospace;font-size:small;color:rgb(68,68,68)">Thank you so much</div><br></div>-- <br><div class="m_-4198620863413212389gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><br class="m_-4198620863413212389webkit-block-placeholder"></div><p><font size="1" face="tahoma, sans-serif" color="#38761d"><b><u>Pablo Solar Rodríguez</u></b></font></p><font size="1" face="tahoma, sans-serif" color="#0b5394"><b><div><a href="mailto:pablosolar.r@gmail.com" style="font-weight:normal" target="_blank"><b>pablosolar.r@gmail.com</b></a><br></div></b></font><div><div><p><br></p></div></div></div></div></div></div>
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<p><font size="1" face="tahoma, sans-serif" color="#38761d"><b><u>Pablo Solar Rodríguez</u></b></font></p><font size="1" face="tahoma, sans-serif" color="#0b5394"><b><div><a href="mailto:pablosolar.r@gmail.com" style="font-weight:normal" target="_blank"><b>pablosolar.r@gmail.com</b></a><br></div></b></font><div><div>
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