<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Devin,<div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Without seeing your PDB files I can’t say for sure, but if your “points” are in ATOM records all in the same residue, then Chimera is using an N-squared algorithm to try to find the connectivity between the “atoms” in your “residue". You can circumvent this computation by putting all your points in HETATM records, and use a different residue number (combined with chain ID if necessary) for each point.</div><div class=""><br class=""></div><div class="">—Eric</div><div class=""><br class=""><div class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>Eric Pettersen</div><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>UCSF Computer Graphics Lab</div><div class=""><br class=""></div></div>
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<br class=""><div><blockquote type="cite" class=""><div class="">On Jan 13, 2017, at 1:02 PM, Devin Haslam <<a href="mailto:dhasl002@odu.edu" class="">dhasl002@odu.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">I am developing an extension for the newest version of chimera. At the moment, my extension takes several .pdb files as input and opens them in the viewer. Currently, I am using the chimera.openmodels.open() to display these pdb files. This was not a problem until I started using .pdb files that consisted of hundreds of points. Because I am opening multiple .pdb files, the call to "setCategory()" does not execute fast enough and the root will have changed. <div class=""><br class=""></div><div class="">In summary, what will I have to do in code to open multiple .pdb files made up of hundreds of points?</div><div class=""><div class=""><br class=""></div>-- <br class=""><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr" class=""><font size="4" class="">Devin Haslam</font><div class=""><font size="2" class="">Old Dominion University, Norfolk, Virginia</font></div></div></div>
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