<html><head><meta http-equiv="Content-Type" content="text/html charset=iso-8859-1"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Sariya,<div><span class="Apple-tab-span" style="white-space:pre"> </span>Your "check" file contains this (one) line:</div><div><br></div><div>67 23</div><div><br></div><div>which means that the residue range you generate is ":67-23" which contains nothing. You want "check" to contain "23 67" so that your residue range becomes ":23-67".</div><div><br></div><div>--Eric</div><div><div><br> Eric Pettersen<br> UCSF Computer Graphics Lab<br> <a href="http://www.cgl.ucsf.edu">http://www.cgl.ucsf.edu</a><br><br></div><div><div>On Apr 21, 2014, at 8:33 PM, Sanjeev Sariya <<a href="mailto:s.sariya_work@ymail.com">s.sariya_work@ymail.com</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div><div style="background-color: rgb(255, 255, 255); font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif; font-size: 10pt; "><br style="" class="">I am having 2 coordinates in check file. I want to take/read them and paint my pdb file loaded in chimera.<br style="" class="">I have chimera in my ~/bin/<br style="" class="">System specs: ubuntu 64 bit, 13.10, 4gb ram<br style="" class=""><br style="" class="">Below is the command I have used for script-chimera communication<br style="" class=""><br style="" class="" clear="all">$ chimera64-1.8.1 --script "y.py check" -- Q6UXT6.pdb<br style="" class=""><br style="" class=""><br style="" class="">I am storing values in listu and want to use them for coloring my file loaded.<br style="" class=""><br style="" class=""> rc("color blue :"+listu[0]+"-"+listu[1])<br style="" class=""><br style="" class="">This works well, if hard coded<br style="" class="">rc
("color red :55-86")<br style="" class=""><div style="" class=""><br style=""></div><div style="font-size: 13.3333px; font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif; background-color: transparent; font-style: normal; " class="">I do not get any error. The particular protein length is not colored.<br></div><div style="font-size: 13.3333px; font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif; background-color: transparent; font-style: normal; " class=""><br style="" class=""></div><div style="font-size: 13.3333px; font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif; background-color: transparent; font-style: normal; " class="">attached 3 files.</div><div style="font-size: 13.3333px; font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif; background-color: transparent; font-style: normal; " class="">Kindly suggest, how do I proceed.</div><div style="font-size: 13.3333px; font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif; background-color: transparent; font-style: normal; " class=""><br></div><div style="" class=""> </div><div style="" class=""><span class="" style="color:rgb(115, 115, 115)">--<br style="" class="">Regards<br style="" class=""></span></div><div class="" style="font-size: 13px; font-family: arial, helvetica, clean, sans-serif; background-color: transparent; font-style: normal; "><span class="" style="color:rgb(115, 115, 115)">Sariya</span><span class="" style="color:rgb(115, 115, 115)"><br style="" class=""></span><br style="" class=""></div></div></div><span><Q6UXT6.pdb></span><span><y.py></span><span><check></span>_______________________________________________<br>Chimera-dev mailing list<br><a href="mailto:Chimera-dev@cgl.ucsf.edu">Chimera-dev@cgl.ucsf.edu</a><br>http://www.rbvi.ucsf.edu/mailman/listinfo/chimera-dev<br></blockquote></div><br></div><br><br></body></html>