<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Matt,<div><br></div><div> Eric is right. Here it is with example Python code</div><div><br></div><div>from VolumeViewer import active_volume</div><div>v = active_volume()</div><div>s = v.matrix_value_statistics()</div><div>print s.minimum, s.maximum</div><div><br></div><div>The active_volume() call can return None, for example if no data set is open. The matrix_value_statistics() call returns the values at the currently displayed subsampling (ie. step size).</div><div><br></div><div> Your comment about the "use mouse scroll wheel" setting not working is a bug that I will look at soon.</div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span><a href="http://plato.cgl.ucsf.edu/trac/chimera/ticket/12187">http://plato.cgl.ucsf.edu/trac/chimera/ticket/12187</a></div><div><br></div><div> Tom</div><div><br></div><div><br></div><div><div><div>On Jul 1, 2013, at 11:14 AM, Eric Pettersen wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><meta http-equiv="Content-Type" content="text/html charset=us-ascii"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div>On Jun 28, 2013, at 9:22 PM, "Dougherty, Matthew T" wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><span style="font-family: monospace; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; display: inline !important; float: none; ">I am trying to write some python scripts relating to volume viewer.</span><br style="font-family: monospace; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><br style="font-family: monospace; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><span style="font-family: monospace; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; display: inline !important; float: none; ">two things I need to have are:</span><br style="font-family: monospace; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><span style="font-family: monospace; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; display: inline !important; float: none; ">1) the ability to figure out what dataset is active on the volume viewer. I will manually pick that with the mouse, my python sw will process the active model in volume viewer.<span class="Apple-converted-space"> </span></span><br style="font-family: monospace; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><span style="font-family: monospace; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; display: inline !important; float: none; ">2) on the selected dataset I need to know what the min/max values are.</span><br style="font-family: monospace; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "></blockquote><br></div><div>Hi Matt,</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>As you know, Tom Goddard is on vacation -- so these answers are for novelty purposes only. :-)</div><div><br></div><div>1) I'm pretty sure that VolumeViewer.volumedialog.active_volume() will return the active volume (can return None of course in some cases).</div><br><div>2) I <i>think</i> that calling the volume's matrix_value_statistics method will return an object whose .minimum and .maximum attributes are what you want. Maybe.</div><div><br></div><div>--Eric</div><br><div apple-content-edited="true">
<span class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px; font-size: 16px; "><div style="margin: 0px; "><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> <span class="Apple-converted-space"> </span></span>Eric Pettersen</font></div><div style="margin: 0px; "><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> <span class="Apple-converted-space"> </span></span>UCSF Computer Graphics Lab</font></div><div style="margin: 0px; "><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> </span><a href="http://www.cgl.ucsf.edu/">http://www.cgl.ucsf.edu</a></font></div><br class="Apple-interchange-newline"></span>
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