[chimera-dev] Fwd: RBVI web update results

[Greg Couch]

That would be Conrad :-).  We should port the script to Python 3.

     -- Greg

On 2/22/2023 8:56 AM, Eric Pettersen via Chimera-dev wrote:
> For whoever is responsible for the "createPub" script...
>
>> Begin forwarded message:
>>
>> *From: *root <root at cgl.ucsf.EDU>
>> *Subject: **RBVI web update results*
>> *Date: *February 22, 2023 at 4:04:54 AM PST
>> *To: *pett at cgl.ucsf.edu
>>
>> Traceback (most recent call last):
>>  File "/usr/local/bin/createPub", line 188, in <module>
>>    main()
>>  File "/usr/local/bin/createPub", line 46, in main
>>    htmlList = formatIds(idList, url)
>>  File "/usr/local/bin/createPub", line 99, in formatIds
>>    output.extend(bufferPid(url, idBuffer, flush=True))
>>  File "/usr/local/bin/createPub", line 109, in bufferPid
>>    data = formatPubmedId(idBuffer, url)
>>  File "/usr/local/bin/createPub", line 124, in formatPubmedId
>>    esr = eSummaryResult.eSummaryResult(data)
>>  File 
>> "/usr/local/lib/python2.7/site-packages/ncbi_eutils/eSummaryResult.py", 
>> line 43, in __init__
>>    raise ExpatError
>> xml.parsers.expat.ExpatError
>
>
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