[chimera-dev] Rosetta cryoEM model refinement plug-in

[Tom Goddard]

Hi David,

  Ok, I'll discuss details with Frank.

	Tom


On Jun 18, 2013, at 11:02 AM, David Baker wrote:

> Hi Tom,
> 
> thanks for getting back to us so quickly!    Ideally perhaps you could write it with our help. We've gotten requests from collaborators that we make our method available in this way. Frank is the expert and has a picture of how this could work – – perhaps the two of you could discuss?
> 
> Best regards,
> 
> David
> 
> 
> On Jun 18, 2013, at 10:11 AM, Tom Goddard wrote:
> 
>> Hi David,
>> 
>> I develop the EM map tools in Chimera and am happy to discuss making a Rosetta refinement plugin.  Could you tell me what setup steps you think would be done in Chimera?  I guess the refinement will take minutes to hours.  Do you want Chimera to show the progress during the refinement?  Is there specific analysis of the refinement result that you want to show in Chimera, e.g. coloring bad fit areas red?  Do you plan on writing this plugin with our help or do you want us to write it?  And have you published articles on the methodology you want the plugin to follow?
>> 
>> 	Tom Goddard
>> 
>> 
>> On Jun 17, 2013, at 4:52 PM, David Baker wrote:
>> 
>>> hello, we are interested in having a rosetta-cryoEM plugin to chimera that would allow users to refine models into maps with Rosetta through a button on chimera (or other simple interface).  who would be good to discuss this with? thanks, David and Frank
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>> 
> 
>