[chimera-dev] add h

Davide Mercadante dmer018 at aucklanduni.ac.nz
Thu Apr 30 23:18:50 PDT 2009


Hi Elaine,

I am a PhD student studying interactions between carbohydrates and
proteins and I am trying to add charges to a molecule that I have to use
for a simulation.
I have followed the guidelines that you give in:

http://www.cgl.ucsf.edu/pipermail/chimera-dev/2004/000312.html

But doesn't work as I want...

My molecule is not a protein in this case but an oligosaccharide of ten
residues long. I have written the pdb file using the server sweet II and
now I am trying to add charges on the carboxylate groups present in the
structures. 
I attach the pdb file and the attribute file that I have created in this
mail. 

The atoms where I would like to add the charges are the OM atoms
specified in the pdb file for each ADA residue.
However, when I try to give the attribute to the atoms chimera replies:

"Data line 1 or file either not selector/value or not tab-delimited"

Please, can you help me to solve this problem and tell me what I wrong?

Thanks in advance for your help.

Cheers,
Davide

Davide Mercadante Ph.D.
Department of Chemistry
The University of Auckland, Auckland
New Zealand
-------------- next part --------------
AUTHOR  Sweet Program 2.0
REMARK  This file was generated by the SWEET-programm.
REMARK  Molecular: 
REMARK  : 
ATOM      1  C1  UNK     1      -2.768  -5.716   8.383  0.00  0.00  C1 
ATOM      2  C2  UNK     1      -3.661  -5.899   9.636  0.00  0.00  C2 
ATOM      3  C3  UNK     1      -5.125  -6.229   9.260  0.00  0.00  C3 
ATOM      4  C4  UNK     1      -5.704  -5.259   8.202  0.00  0.00  C4 
ATOM      5  C5  UNK     1      -4.755  -5.196   6.968  0.00  0.00  C5 
ATOM      6  C6  UNK     1      -5.278  -4.282   5.841  0.00  0.00  C6 
ATOM      7  OR  UNK     1      -3.403  -4.824   7.421  0.00  0.00 O7  
ATOM      8  OR  UNK     1      -2.523  -6.979   7.781  0.00  0.00 O8  
ATOM      9  O2h UNK     1      -3.160  -6.946  10.460  0.00  0.00 OH2 
ATOM     10  O3h UNK     1      -5.931  -6.161  10.428  0.00  0.00 OH3 
ATOM     11  O4h UNK     1      -5.839  -3.962   8.784  0.00  0.00 OH4 
ATOM     12  OM  UNK     1      -6.375  -4.419   5.305  0.00  0.00 O12 
ATOM     13  H1  UNK     1      -1.798  -5.280   8.693  0.00  0.00 H1  
ATOM     14  H2  UNK     1      -3.644  -4.951  10.208  0.00  0.00 H2  
ATOM     15  H3  UNK     1      -5.168  -7.262   8.857  0.00  0.00 H3  
ATOM     16  H4  UNK     1      -6.705  -5.618   7.888  0.00  0.00 H4  
ATOM     17  H5  UNK     1      -4.709  -6.204   6.512  0.00  0.00 H5  
ATOM     18  H2o UNK     1      -3.881  -7.144  11.071  0.00  0.00 HH2 
ATOM     19  H3o UNK     1      -6.383  -5.311  10.358  0.00  0.00 HH3 
ATOM     20  H4o UNK     1      -4.950  -3.592   8.790  0.00  0.00 HH4 
ATOM     21  C22 UNK     1      -4.771  -2.076   6.061  0.00  0.00  C22
ATOM     22  H22 UNK     1      -4.060  -1.322   5.788  0.00  0.00 H22  
ATOM     23  H24 UNK     1      -4.808  -2.164   7.126  0.00  0.00 H24 
ATOM     24  H25 UNK     1      -5.739  -1.805   5.692  0.00  0.00 H25 
ATOM     25  OW  UNK     1      -4.378  -3.328   5.495  0.00  0.00 O26 
ATOM     26  C1  UNK     2      -1.357  -8.887   5.013  0.00  0.00  C1 
ATOM     27  C2  UNK     2      -1.416  -7.340   4.977  0.00  0.00  C2 
ATOM     28  C3  UNK     2      -0.708  -6.705   6.198  0.00  0.00  C3 
ATOM     29  C4  UNK     2      -1.160  -7.328   7.541  0.00  0.00  C4 
ATOM     30  C5  UNK     2      -1.007  -8.877   7.483  0.00  0.00  C5 
ATOM     31  C6  UNK     2      -1.395  -9.581   8.799  0.00  0.00  C6 
ATOM     32  OR  UNK     2      -1.756  -9.390   6.321  0.00  0.00 O7  
ATOM     33  OR  UNK     2      -0.041  -9.324   4.709  0.00  0.00 O8  
ATOM     34  O2h UNK     2      -0.803  -6.842   3.792  0.00  0.00 OH2 
ATOM     35  O3h UNK     2      -0.989  -5.313   6.226  0.00  0.00 OH3 
ATOM     36  OM  UNK     2      -0.886  -9.320   9.887  0.00  0.00 O12 
ATOM     37  H1  UNK     2      -2.047  -9.291   4.246  0.00  0.00 H1  
ATOM     38  H2  UNK     2      -2.482  -7.038   4.985  0.00  0.00 H2  
ATOM     39  H3  UNK     2       0.387  -6.846   6.092  0.00  0.00 H3  
ATOM     40  H4  UNK     2      -0.534  -6.920   8.361  0.00  0.00 H4  
ATOM     41  H5  UNK     2       0.065  -9.117   7.343  0.00  0.00 H5  
ATOM     42  H2o UNK     2      -0.676  -5.900   3.959  0.00  0.00 HH2 
ATOM     43  H3o UNK     2      -1.669  -5.219   6.905  0.00  0.00 HH3 
ATOM     44  C22 UNK     2      -3.610 -10.034   9.046  0.00  0.00  C22
ATOM     45  H22 UNK     2      -4.359 -10.785   8.898  0.00  0.00 H22  
ATOM     46  H24 UNK     2      -3.861  -9.162   8.479  0.00  0.00 H24 
ATOM     47  H25 UNK     2      -3.558  -9.780  10.085  0.00  0.00 H25 
ATOM     48  OW  UNK     2      -2.343 -10.532   8.612  0.00  0.00 O26 
ATOM     49  C1  UNK     3       2.389 -11.922   4.621  0.00  0.00  C1 
ATOM     50  C2  UNK     3       0.976 -12.140   5.216  0.00  0.00  C2 
ATOM     51  C3  UNK     3      -0.138 -11.699   4.237  0.00  0.00  C3 
ATOM     52  C4  UNK     3       0.098 -10.282   3.660  0.00  0.00  C4 
ATOM     53  C5  UNK     3       1.525 -10.195   3.042  0.00  0.00  C5 
ATOM     54  C6  UNK     3       1.833  -8.826   2.402  0.00  0.00  C6 
ATOM     55  OR  UNK     3       2.516 -10.582   4.063  0.00  0.00 O7  
ATOM     56  OR  UNK     3       2.639 -12.890   3.612  0.00  0.00 O8  
ATOM     57  O2h UNK     3       0.774 -13.511   5.541  0.00  0.00 OH2 
ATOM     58  O3h UNK     3      -1.385 -11.710   4.917  0.00  0.00 OH3 
ATOM     59  OM  UNK     3       1.146  -8.316   1.520  0.00  0.00 O12 
ATOM     60  H1  UNK     3       3.142 -12.050   5.424  0.00  0.00 H1  
ATOM     61  H2  UNK     3       0.899 -11.536   6.141  0.00  0.00 H2  
ATOM     62  H3  UNK     3      -0.184 -12.422   3.397  0.00  0.00 H3  
ATOM     63  H4  UNK     3      -0.662 -10.075   2.880  0.00  0.00 H4  
ATOM     64  H5  UNK     3       1.586 -10.916   2.204  0.00  0.00 H5  
ATOM     65  H2o UNK     3      -0.177 -13.594   5.677  0.00  0.00 HH2 
ATOM     66  H3o UNK     3      -1.558 -10.782   5.116  0.00  0.00 HH3 
ATOM     67  C22 UNK     3       2.600  -7.233   3.833  0.00  0.00  C22
ATOM     68  H22 UNK     3       3.488  -6.789   4.234  0.00  0.00 H22  
ATOM     69  H24 UNK     3       2.020  -7.653   4.627  0.00  0.00 H24 
ATOM     70  H25 UNK     3       2.023  -6.485   3.329  0.00  0.00 H25 
ATOM     71  OW  UNK     3       2.957  -8.264   2.910  0.00  0.00 O26 
ATOM     72  C1  ADA     4       3.738 -15.696   1.720  0.00  0.00  C1 
ATOM     73  C2  ADA     4       3.512 -14.308   1.073  0.00  0.00  C2 
ATOM     74  C3  ADA     4       4.259 -13.186   1.834  0.00  0.00  C3 
ATOM     75  C4  ADA     4       4.003 -13.226   3.360  0.00  0.00  C4 
ATOM     76  C5  ADA     4       4.313 -14.650   3.910  0.00  0.00  C5 
ATOM     77  C6  ADA     4       4.127 -14.771   5.436  0.00  0.00  C6 
ATOM     78  OR  ADA     4       3.518 -15.639   3.160  0.00  0.00 O7  
ATOM     79  OR  ADA     4       5.059 -16.141   1.452  0.00  0.00 O8  
ATOM     80  O2h ADA     4       3.955 -14.306  -0.280  0.00  0.00 OH2 
ATOM     81  O3h ADA     4       3.836 -11.925   1.335  0.00  0.00 OH3 
ATOM     82  OM  ADA     4       4.704 -14.056   6.252  0.00  0.00 O12 
ATOM     83  O6h ADA     4       3.265 -15.775   5.774  0.00  0.00 OH6 
ATOM     84  H1  ADA     4       3.026 -16.420   1.276  0.00  0.00 H1  
ATOM     85  H2  ADA     4       2.426 -14.093   1.096  0.00  0.00 H2  
ATOM     86  H3  ADA     4       5.348 -13.293   1.653  0.00  0.00 H3  
ATOM     87  H4  ADA     4       4.656 -12.481   3.858  0.00  0.00 H4  
ATOM     88  H5  ADA     4       5.387 -14.862   3.742  0.00  0.00 H5  
ATOM     89  H6o ADA     4       2.990 -16.213   4.965  0.00  0.00 HH6 
ATOM     90  H2o ADA     4       3.996 -13.374  -0.524  0.00  0.00 HH2 
ATOM     91  H3o ADA     4       3.216 -11.600   2.000  0.00  0.00 HH3 
ATOM     92  C1  ADA     5       7.964 -17.753   0.175  0.00  0.00  C1 
ATOM     93  C2  ADA     5       7.839 -17.345   1.664  0.00  0.00  C2 
ATOM     94  C3  ADA     5       6.530 -17.871   2.301  0.00  0.00  C3 
ATOM     95  C4  ADA     5       5.279 -17.552   1.446  0.00  0.00  C4 
ATOM     96  C5  ADA     5       5.495 -18.054  -0.013  0.00  0.00  C5 
ATOM     97  C6  ADA     5       4.277 -17.815  -0.928  0.00  0.00  C6 
ATOM     98  OR  ADA     5       6.733 -17.459  -0.548  0.00  0.00 O7  
ATOM     99  OR  ADA     5       8.258 -19.139   0.082  0.00  0.00 O8  
ATOM    100  O2h ADA     5       8.939 -17.847   2.416  0.00  0.00 OH2 
ATOM    101  O3h ADA     5       6.366 -17.280   3.582  0.00  0.00 OH3 
ATOM    102  OM  ADA     5       3.148 -18.234  -0.684  0.00  0.00 O12 
ATOM    103  O6h ADA     5       4.603 -17.106  -2.049  0.00  0.00 OH6 
ATOM    104  H1  ADA     5       8.796 -17.185  -0.285  0.00  0.00 H1  
ATOM    105  H2  ADA     5       7.842 -16.238   1.716  0.00  0.00 H2  
ATOM    106  H3  ADA     5       6.606 -18.971   2.422  0.00  0.00 H3  
ATOM    107  H4  ADA     5       4.397 -18.056   1.890  0.00  0.00 H4  
ATOM    108  H5  ADA     5       5.616 -19.154   0.011  0.00  0.00 H5  
ATOM    109  H6o ADA     5       5.549 -16.941  -2.029  0.00  0.00 HH6 
ATOM    110  H2o ADA     5       8.669 -17.753   3.338  0.00  0.00 HH2 
ATOM    111  H3o ADA     5       5.710 -16.587   3.445  0.00  0.00 HH3 
ATOM    112  C1  ADA     6       9.812 -22.317  -0.306  0.00  0.00  C1 
ATOM    113  C2  ADA     6       8.350 -22.059  -0.747  0.00  0.00  C2 
ATOM    114  C3  ADA     6       8.233 -20.819  -1.665  0.00  0.00  C3 
ATOM    115  C4  ADA     6       8.952 -19.576  -1.087  0.00  0.00  C4 
ATOM    116  C5  ADA     6      10.425 -19.937  -0.731  0.00  0.00  C5 
ATOM    117  C6  ADA     6      11.233 -18.742  -0.186  0.00  0.00  C6 
ATOM    118  OR  ADA     6      10.429 -21.091   0.186  0.00  0.00 O7  
ATOM    119  OR  ADA     6      10.560 -22.828  -1.399  0.00  0.00 O8  
ATOM    120  O2h ADA     6       7.830 -23.186  -1.443  0.00  0.00 OH2 
ATOM    121  O3h ADA     6       6.860 -20.505  -1.849  0.00  0.00 OH3 
ATOM    122  OM  ADA     6      11.374 -17.681  -0.790  0.00  0.00 O12 
ATOM    123  O6h ADA     6      11.790 -19.006   1.033  0.00  0.00 OH6 
ATOM    124  H1  ADA     6       9.816 -23.072   0.506  0.00  0.00 H1  
ATOM    125  H2  ADA     6       7.744 -21.887   0.164  0.00  0.00 H2  
ATOM    126  H3  ADA     6       8.679 -21.060  -2.652  0.00  0.00 H3  
ATOM    127  H4  ADA     6       8.937 -18.763  -1.841  0.00  0.00 H4  
ATOM    128  H5  ADA     6      10.948 -20.226  -1.662  0.00  0.00 H5  
ATOM    129  H6o ADA     6      11.574 -19.913   1.266  0.00  0.00 HH6 
ATOM    130  H2o ADA     6       7.029 -22.862  -1.872  0.00  0.00 HH2 
ATOM    131  H3o ADA     6       6.705 -19.755  -1.261  0.00  0.00 HH3 
ATOM    132  C1  ADA     7      12.314 -24.875  -3.722  0.00  0.00  C1 
ATOM    133  C2  ADA     7      12.737 -23.413  -3.433  0.00  0.00  C2 
ATOM    134  C3  ADA     7      12.906 -23.148  -1.918  0.00  0.00  C3 
ATOM    135  C4  ADA     7      11.694 -23.637  -1.087  0.00  0.00  C4 
ATOM    136  C5  ADA     7      11.394 -25.129  -1.418  0.00  0.00  C5 
ATOM    137  C6  ADA     7      10.225 -25.714  -0.600  0.00  0.00  C6 
ATOM    138  OR  ADA     7      11.198 -25.269  -2.872  0.00  0.00 O7  
ATOM    139  OR  ADA     7      13.415 -25.744  -3.506  0.00  0.00 O8  
ATOM    140  O2h ADA     7      13.966 -23.108  -4.084  0.00  0.00 OH2 
ATOM    141  O3h ADA     7      13.069 -21.753  -1.706  0.00  0.00 OH3 
ATOM    142  OM  ADA     7      10.186 -25.717   0.628  0.00  0.00 O12 
ATOM    143  O6h ADA     7       9.252 -26.246  -1.397  0.00  0.00 OH6 
ATOM    144  H1  ADA     7      12.005 -24.957  -4.783  0.00  0.00 H1  
ATOM    145  H2  ADA     7      11.946 -22.745  -3.827  0.00  0.00 H2  
ATOM    146  H3  ADA     7      13.816 -23.672  -1.561  0.00  0.00 H3  
ATOM    147  H4  ADA     7      11.927 -23.530  -0.008  0.00  0.00 H4  
ATOM    148  H5  ADA     7      12.273 -25.734  -1.122  0.00  0.00 H5  
ATOM    149  H6o ADA     7       9.540 -26.163  -2.310  0.00  0.00 HH6 
ATOM    150  H2o ADA     7      14.265 -22.288  -3.672  0.00  0.00 HH2 
ATOM    151  H3o ADA     7      12.206 -21.455  -1.393  0.00  0.00 HH3 
ATOM    152  C1  ADA     8      16.223 -27.905  -3.843  0.00  0.00  C1 
ATOM    153  C2  ADA     8      15.184 -28.080  -2.708  0.00  0.00  C2 
ATOM    154  C3  ADA     8      13.736 -28.133  -3.252  0.00  0.00  C3 
ATOM    155  C4  ADA     8      13.422 -26.974  -4.230  0.00  0.00  C4 
ATOM    156  C5  ADA     8      14.498 -26.927  -5.356  0.00  0.00  C5 
ATOM    157  C6  ADA     8      14.239 -25.825  -6.403  0.00  0.00  C6 
ATOM    158  OR  ADA     8      15.833 -26.824  -4.740  0.00  0.00 O7  
ATOM    159  OR  ADA     8      16.346 -29.117  -4.572  0.00  0.00 O8  
ATOM    160  O2h ADA     8      15.434 -29.277  -1.978  0.00  0.00 OH2 
ATOM    161  O3h ADA     8      12.827 -28.067  -2.163  0.00  0.00 OH3 
ATOM    162  OM  ADA     8      13.198 -25.728  -7.048  0.00  0.00 O12 
ATOM    163  O6h ADA     8      15.307 -24.986  -6.546  0.00  0.00 OH6 
ATOM    164  H1  ADA     8      17.207 -27.663  -3.395  0.00  0.00 H1  
ATOM    165  H2  ADA     8      15.276 -27.215  -2.023  0.00  0.00 H2  
ATOM    166  H3  ADA     8      13.587 -29.096  -3.783  0.00  0.00 H3  
ATOM    167  H4  ADA     8      12.419 -27.136  -4.675  0.00  0.00 H4  
ATOM    168  H5  ADA     8      14.446 -27.874  -5.927  0.00  0.00 H5  
ATOM    169  H6o ADA     8      16.009 -25.301  -5.970  0.00  0.00 HH6 
ATOM    170  H2o ADA     8      14.631 -29.424  -1.465  0.00  0.00 HH2 
ATOM    171  H3o ADA     8      12.514 -27.154  -2.167  0.00  0.00 HH3 
ATOM    172  C1  ADA     9      17.389 -32.239  -5.923  0.00  0.00  C1 
ATOM    173  C2  ADA     9      16.636 -31.187  -6.774  0.00  0.00  C2 
ATOM    174  C3  ADA     9      17.303 -29.793  -6.694  0.00  0.00  C3 
ATOM    175  C4  ADA     9      17.587 -29.349  -5.238  0.00  0.00  C4 
ATOM    176  C5  ADA     9      18.393 -30.457  -4.496  0.00  0.00  C5 
ATOM    177  C6  ADA     9      18.759 -30.080  -3.046  0.00  0.00  C6 
ATOM    178  OR  ADA     9      17.653 -31.729  -4.584  0.00  0.00 O7  
ATOM    179  OR  ADA     9      18.611 -32.584  -6.558  0.00  0.00 O8  
ATOM    180  O2h ADA     9      16.590 -31.586  -8.140  0.00  0.00 OH2 
ATOM    181  O3h ADA     9      16.451 -28.834  -7.303  0.00  0.00 OH3 
ATOM    182  OM  ADA     9      19.386 -29.068  -2.742  0.00  0.00 O12 
ATOM    183  O6h ADA     9      18.325 -31.010  -2.145  0.00  0.00 OH6 
ATOM    184  H1  ADA     9      16.765 -33.151  -5.844  0.00  0.00 H1  
ATOM    185  H2  ADA     9      15.602 -31.111  -6.387  0.00  0.00 H2  
ATOM    186  H3  ADA     9      18.263 -29.821  -7.250  0.00  0.00 H3  
ATOM    187  H4  ADA     9      18.171 -28.406  -5.252  0.00  0.00 H4  
ATOM    188  H5  ADA     9      19.367 -30.581  -5.007  0.00  0.00 H5  
ATOM    189  H6o ADA     9      17.908 -31.724  -2.634  0.00  0.00 HH6 
ATOM    190  H2o ADA     9      16.324 -30.792  -8.619  0.00  0.00 HH2 
ATOM    191  H3o ADA     9      16.029 -28.383  -6.561  0.00  0.00 HH3 
ATOM    192  C1  ADA    10      21.222 -34.164  -8.389  0.00  0.00  C1 
ATOM    193  C2  ADA    10      21.505 -33.298  -7.137  0.00  0.00  C2 
ATOM    194  C3  ADA    10      20.648 -33.735  -5.924  0.00  0.00  C3 
ATOM    195  C4  ADA    10      19.147 -33.877  -6.274  0.00  0.00  C4 
ATOM    196  C5  ADA    10      18.978 -34.809  -7.511  0.00  0.00  C5 
ATOM    197  C6  ADA    10      17.505 -35.042  -7.905  0.00  0.00  C6 
ATOM    198  OR  ADA    10      19.788 -34.282  -8.624  0.00  0.00 O7  
ATOM    199  O1h ADA    10      21.789 -35.454  -8.219  0.00  0.00 OH1 
ATOM    200  O2h ADA    10      22.879 -33.381  -6.770  0.00  0.00 OH2 
ATOM    201  O3h ADA    10      20.784 -32.774  -4.888  0.00  0.00 OH3 
ATOM    202  OM  ADA    10      16.656 -35.489  -7.137  0.00  0.00 O12 
ATOM    203  O6h ADA    10      17.261 -34.716  -9.208  0.00  0.00 OH6 
ATOM    204  H1  ADA    10      21.693 -33.687  -9.271  0.00  0.00 H1  
ATOM    205  H2  ADA    10      21.262 -32.247  -7.386  0.00  0.00 H2  
ATOM    206  H3  ADA    10      21.020 -34.713  -5.555  0.00  0.00 H3  
ATOM    207  H4  ADA    10      18.609 -34.306  -5.404  0.00  0.00 H4  
ATOM    208  H5  ADA    10      19.358 -35.814  -7.244  0.00  0.00 H5  
ATOM    209  H6o ADA    10      18.091 -34.440  -9.604  0.00  0.00 HH6 
ATOM    210  H1o ADA    10      22.593 -35.283  -7.718  0.00  0.00 HH1 
ATOM    211  H2o ADA    10      22.917 -33.017  -5.877  0.00  0.00 HH2 
ATOM    212  H3o ADA    10      19.974 -32.252  -4.937  0.00  0.00 HH3 
TER
CONECT    1    7    2   13    8
CONECT    2    1    3    9   14
CONECT    3    2    4   10   15
CONECT    4    3    5   11   16
CONECT    5    4    7    6   17
CONECT    6    5   12   25
CONECT    7    1    5
CONECT    8    1   29
CONECT    9    2   18
CONECT   10    3   19
CONECT   11    4   20
CONECT   12    6
CONECT   13    1
CONECT   14    2
CONECT   15    3
CONECT   16    4
CONECT   17    5
CONECT   18    9
CONECT   19   10
CONECT   20   11
CONECT   21   22   23   24   25
CONECT   22   21
CONECT   23   21
CONECT   24   21
CONECT   25   21    6
CONECT   26   32   27   37   33
CONECT   27   26   28   34   38
CONECT   28   27   29   35   39
CONECT   29   28   30   40    8
CONECT   30   29   32   31   41
CONECT   31   30   36   48
CONECT   32   26   30
CONECT   33   26   52
CONECT   34   27   42
CONECT   35   28   43
CONECT   36   31
CONECT   37   26
CONECT   38   27
CONECT   39   28
CONECT   40   29
CONECT   41   30
CONECT   42   34
CONECT   43   35
CONECT   44   45   46   47   48
CONECT   45   44
CONECT   46   44
CONECT   47   44
CONECT   48   44   31
CONECT   49   55   50   60   56
CONECT   50   49   51   57   61
CONECT   51   50   52   58   62
CONECT   52   51   53   63   33
CONECT   53   52   55   54   64
CONECT   54   53   59   71
CONECT   55   49   53
CONECT   56   49   75
CONECT   57   50   65
CONECT   58   51   66
CONECT   59   54
CONECT   60   49
CONECT   61   50
CONECT   62   51
CONECT   63   52
CONECT   64   53
CONECT   65   57
CONECT   66   58
CONECT   67   68   69   70   71
CONECT   68   67
CONECT   69   67
CONECT   70   67
CONECT   71   67   54
CONECT   72   78   73   84   79
CONECT   73   72   74   80   85
CONECT   74   73   75   81   86
CONECT   75   74   76   87   56
CONECT   76   75   78   77   88
CONECT   77   76   82   83
CONECT   78   72   76
CONECT   79   72   95
CONECT   80   73   90
CONECT   81   74   91
CONECT   82   77
CONECT   83   77   89
CONECT   84   72
CONECT   85   73
CONECT   86   74
CONECT   87   75
CONECT   88   76
CONECT   89   83
CONECT   90   80
CONECT   91   81
CONECT   92   98   93  104   99
CONECT   93   92   94  100  105
CONECT   94   93   95  101  106
CONECT   95   94   96  107   79
CONECT   96   95   98   97  108
CONECT   97   96  102  103
CONECT   98   92   96
CONECT   99   92  115
CONECT  100   93  110
CONECT  101   94  111
CONECT  102   97
CONECT  103   97  109
CONECT  104   92
CONECT  105   93
CONECT  106   94
CONECT  107   95
CONECT  108   96
CONECT  109  103
CONECT  110  100
CONECT  111  101
CONECT  112  118  113  124  119
CONECT  113  112  114  120  125
CONECT  114  113  115  121  126
CONECT  115  114  116  127   99
CONECT  116  115  118  117  128
CONECT  117  116  122  123
CONECT  118  112  116
CONECT  119  112  135
CONECT  120  113  130
CONECT  121  114  131
CONECT  122  117
CONECT  123  117  129
CONECT  124  112
CONECT  125  113
CONECT  126  114
CONECT  127  115
CONECT  128  116
CONECT  129  123
CONECT  130  120
CONECT  131  121
CONECT  132  138  133  144  139
CONECT  133  132  134  140  145
CONECT  134  133  135  141  146
CONECT  135  134  136  147  119
CONECT  136  135  138  137  148
CONECT  137  136  142  143
CONECT  138  132  136
CONECT  139  132  155
CONECT  140  133  150
CONECT  141  134  151
CONECT  142  137
CONECT  143  137  149
CONECT  144  132
CONECT  145  133
CONECT  146  134
CONECT  147  135
CONECT  148  136
CONECT  149  143
CONECT  150  140
CONECT  151  141
CONECT  152  158  153  164  159
CONECT  153  152  154  160  165
CONECT  154  153  155  161  166
CONECT  155  154  156  167  139
CONECT  156  155  158  157  168
CONECT  157  156  162  163
CONECT  158  152  156
CONECT  159  152  175
CONECT  160  153  170
CONECT  161  154  171
CONECT  162  157
CONECT  163  157  169
CONECT  164  152
CONECT  165  153
CONECT  166  154
CONECT  167  155
CONECT  168  156
CONECT  169  163
CONECT  170  160
CONECT  171  161
CONECT  172  178  173  184  179
CONECT  173  172  174  180  185
CONECT  174  173  175  181  186
CONECT  175  174  176  187  159
CONECT  176  175  178  177  188
CONECT  177  176  182  183
CONECT  178  172  176
CONECT  179  172  195
CONECT  180  173  190
CONECT  181  174  191
CONECT  182  177
CONECT  183  177  189
CONECT  184  172
CONECT  185  173
CONECT  186  174
CONECT  187  175
CONECT  188  176
CONECT  189  183
CONECT  190  180
CONECT  191  181
CONECT  192  198  193  204  199
CONECT  193  192  194  200  205
CONECT  194  193  195  201  206
CONECT  195  194  196  207  179
CONECT  196  195  198  197  208
CONECT  197  196  202  203
CONECT  198  192  196
CONECT  199  192  210
CONECT  200  193  211
CONECT  201  194  212
CONECT  202  197
CONECT  203  197  209
CONECT  204  192
CONECT  205  193
CONECT  206  194
CONECT  207  195
CONECT  208  196
CONECT  209  203
CONECT  210  199
CONECT  211  200
CONECT  212  201
PHIOME    1     1   8  29    0    13   1   8  29     1   8  29  40     0   0   0   0  
PHIOME    2    26  33  52    0    37  26  33  52    26  33  52  63     0   0   0   0  
PHIOME    3    49  56  75    0    60  49  56  75    49  56  75  87     0   0   0   0  
PHIOME    4    72  79  95    0    84  72  79  95    72  79  95 107     0   0   0   0  
PHIOME    5    92  99 115    0   104  92  99 115    92  99 115 127     0   0   0   0  
PHIOME    6   112 119 135    0   124 112 119 135   112 119 135 147     0   0   0   0  
PHIOME    7   132 139 155    0   144 132 139 155   132 139 155 167     0   0   0   0  
PHIOME    8   152 159 175    0   164 152 159 175   152 159 175 187     0   0   0   0  
PHIOME    9   172 179 195    0   184 172 179 195   172 179 195 207     0   0   0   0  
SWECON 1   1  2  A-D-GALPA6ME-(1-4)-A-D-GALPA6ME 
SWECON 2   2  3  A-D-GALPA6ME-(1-4)-A-D-GALPA6ME 
SWECON 3   3  4  A-D-GALPA6ME-(1-4)-A-D-GALPA 
SWECON 4   4  5  A-D-GALPA-(1-4)-A-D-GALPA 
SWECON 5   5  6  A-D-GALPA-(1-4)-A-D-GALPA 
SWECON 6   6  7  A-D-GALPA-(1-4)-A-D-GALPA 
SWECON 7   7  8  A-D-GALPA-(1-4)-A-D-GALPA 
SWECON 8   8  9  A-D-GALPA-(1-4)-A-D-GALPA 
SWECON 9   9 10  A-D-GALPA-(1-4)-A-D-GALPA 
END
-------------- next part --------------
#
attribute: idatmType
match mode: 1-to-1
	:ADA 4  @ om		O2
	:ADA 5  @ om		O2
	:ADA 6  @ om		O2
	:ADA 7  @ om 		O2
	:ADA 8  @ om 	 	O2
	:ADA 9  @ om		O2
	:ADA 10 @ om		O2


More information about the Chimera-dev mailing list