[chimera-dev] mixing names
Patrick Ladam
ladam at smbh.univ-paris13.fr
Tue Oct 14 07:45:59 PDT 2008
Hello to the list,
I start trying to write my first py code in chimera (not that easy
without too much doc strings) and have a first question to submit.
Here is what I am doing in IDLE:
>>> import chimera
>>> opened = chimera.openModels.open('1zik.pdb')
>>> mol = opened[0]
>>> for i in mol.atoms:
print i.name
N
CA
CB
CG
CD
.../...
# Now I want to instanciate an atom and set its name attribute:
>>> at1=chimera.Atom
>>> at1.name="BC1"
>>> print at1.name
BC1
>>>
# Now I redo the previous loop:
>>> for i in mol.atoms:
print i.name
BC1
BC1
BC1
BC1
BC1
BC1
BC1
BC1
BC1
BC1
BC1
BC1
.../...
They're all BC1!!!
How come ? My created atom 'at1' and my 'mol' are supposed to be
completely seperated objects no?
Can someone help, I am afraid I missed something really basic here...
Bye to all
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