[chimera-dev] residues in highlight lens?

David E. Konerding dek at compbio.berkeley.edu
Mon Mar 17 15:57:23 PST 2003


Eric Pettersen wrote:

> A good idea, though the 1.0 release is frozen feature-wise.  I've put 
> this, along with some other highlight-lens improvements on a to-do list.
>
> --Eric
>
> On Friday, March 14, 2003, at 05:37 PM, David E. Konerding wrote:
>
>> Hi, from what I can tell, there is no way to use the ribbon 
>> representation within the highlight lens; the options are limited to
>> atom and bond representations.  I am hoping to turn on only the 
>> ribbon representation in the highlight lens, leaving atom and bonds 
>> disabled.
>> Is this available?  If it isn't, wouldn't this be a reasonable 
>> feature to add to the highlight lens?
>>

Great!  While you're at it, I think Pseudobonds should be included in 
the highlight lens interface.
You get a very funny effect when using chain @ca plus a highlight lens 
that shows all backbone and sidechain atoms: you see both the pseudobond 
chain and the regular backbone chain at the same time.

Since now I am focusing on side chain predictions, I wanted to be able 
to use chain or ribbon representation for the template and model 
structures, plus a lens that showed just the sidechain and backbone in 
wireframe.  This lets you see both the global fold and the local data at 
the same time, without lots of command line typing.

Dave




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