SEQCROW: A ChimeraX bundle to facilitate quantum chemical applications to complex molecular systems. Schaefer AJ, Ingman VM, Wheeler SE. J Comput Chem. 2021 Sep 15;42(24):1750-1754.
Regulation of human mTOR complexes by DEPTOR. Wälchli M, Berneiser K et al. eLife. 2021 Sep 14;10:e70871.
Nucleolar maturation of the human small subunit processome. Singh S, Vanden Broeck A et al. Science. 2021 Sep 10;373(6560):eabj5338.
Structural basis for piRNA targeting. Anzelon TA, Chowdhury S et al. Nature. 2021 Sep 9;597(7875):285-289.
Structural basis of mismatch recognition by a SARS-CoV-2 proofreading enzyme. Liu C, Shi W et al. Science. 2021 Sep 3;373(6559):1142-1146.More citations...
May 28, 2021
December 11, 2020
November 4, 2020
New paper online: UCSF ChimeraX: Structure visualization for researchers, educators, and developers. Pettersen EF, Goddard TD, et al. Protein Sci. 2020, in press.Previous news...
UCSF ChimeraX (or simply ChimeraX) is the next-generation molecular visualization program from the Resource for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera. ChimeraX can be downloaded free of charge for academic, government, nonprofit, and personal use. Commercial users, please see ChimeraX commercial licensing.
ChimeraX is developed with support from National Institutes of Health R01-GM129325 and the Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases.
Atomic structures and/or maps can be fit rigidly into other maps with the Map icon , the Fit in Map tool, or the fitmap command. A common use is to locally optimize the fit after initial placement by hand. The command includes options for symmetrical and sequential fitting, as well as global search to generate multiple starting points for local optimization.
Elongator is a highly conserved complex that associates with RNA polymerase II during transcriptional elongation. In the image, one of its six subunits, Elp2 (PDB 5m2n), has been fit into a map of the Elp123 subcomplex (EMDB 4151).More features...
Atomic B-factor values are read from PDB and mmCIF input files and assigned as attributes that can be shown with coloring and used in atom specification. This example shows B-factor variation within a structure of the HIV-1 protease bound to an inhibitor (PDB 4hvp). For complete image setup, including positioning, color key, and label, see the command file bfactor.cxc.
About RBVI | Projects | People | Publications | Resources | Visit Us
Copyright 2018 Regents of the University of California. All rights reserved.